DNA Deoxyribo Nucleic Acid
 Jmol._Canvas2D (Jmol) "jmolApplet73_0"[x] script 1 started loadScript https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/core/coretext.z.js JSmol exec jmolApplet73_1 start applet null Jmol JavaScript applet jmolApplet73_1__774015965959103__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet73_1__774015965959103__) vwrOptions: { "name":"jmolApplet73_1","applet":true,"documentBase":"https://stwww1.weizmann.ac.il/chemlife/?p=73","platform":"J.awtjs2d.Platform","fullName":"jmolApplet73_1__774015965959103__","codePath":"https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/","display":"jmolApplet73_1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"774015965959103","bgcolor":"white" } setting document base to "https://stwww1.weizmann.ac.il/chemlife/?p=73" (C) 2015 Jmol Development Jmol Version: 14.29.4 2018-02-07 23:40 java.vendor: Java2Script (HTML5) java.version: 2018-01-28 23:38:52 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet73_1 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor white backgroundColor = "white" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet73_1__774015965959103__ ready |
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קולגן Collagen
Jmol._Canvas2D (Jmol) "jmolApplet73_1"[x] script 1 started loading collagene2... JSmol exec jmolApplet73_2 start applet null Jmol JavaScript applet jmolApplet73_2__774015965959103__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet73_2__774015965959103__) vwrOptions: { "name":"jmolApplet73_2","applet":true,"documentBase":"https://stwww1.weizmann.ac.il/chemlife/?p=73","platform":"J.awtjs2d.Platform","fullName":"jmolApplet73_2__774015965959103__","codePath":"https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/","display":"jmolApplet73_2_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"774015965959103","bgcolor":"white" } setting document base to "https://stwww1.weizmann.ac.il/chemlife/?p=73" (C) 2015 Jmol Development Jmol Version: 14.29.4 2018-02-07 23:40 java.vendor: Java2Script (HTML5) java.version: 2018-01-28 23:38:52 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet73_2 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor white backgroundColor = "white" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet73_2__774015965959103__ ready |
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קטע קצר של תאית Cellulose
Jmol._Canvas2D (Jmol) "jmolApplet73_2"[x] script 1 started loading Cellulose... JSmol exec jmolApplet73_3 start applet null Jmol JavaScript applet jmolApplet73_3__774015965959103__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet73_3__774015965959103__) vwrOptions: { "name":"jmolApplet73_3","applet":true,"documentBase":"https://stwww1.weizmann.ac.il/chemlife/?p=73","platform":"J.awtjs2d.Platform","fullName":"jmolApplet73_3__774015965959103__","codePath":"https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/","display":"jmolApplet73_3_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"774015965959103","bgcolor":"white" } setting document base to "https://stwww1.weizmann.ac.il/chemlife/?p=73" (C) 2015 Jmol Development Jmol Version: 14.29.4 2018-02-07 23:40 java.vendor: Java2Script (HTML5) java.version: 2018-01-28 23:38:52 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet73_3 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor white backgroundColor = "white" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet73_3__774015965959103__ ready |
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המוגלובין Hemoglobine
Jmol._Canvas2D (Jmol) "jmolApplet73_3"[x] script 1 started loading hemoglobine... JSmol exec jmolApplet73_4 start applet null Jmol JavaScript applet jmolApplet73_4__774015965959103__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet73_4__774015965959103__) vwrOptions: { "name":"jmolApplet73_4","applet":true,"documentBase":"https://stwww1.weizmann.ac.il/chemlife/?p=73","platform":"J.awtjs2d.Platform","fullName":"jmolApplet73_4__774015965959103__","codePath":"https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/","display":"jmolApplet73_4_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"774015965959103","bgcolor":"white" } setting document base to "https://stwww1.weizmann.ac.il/chemlife/?p=73" (C) 2015 Jmol Development Jmol Version: 14.29.4 2018-02-07 23:40 java.vendor: Java2Script (HTML5) java.version: 2018-01-28 23:38:52 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet73_4 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor white backgroundColor = "white" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet73_4__774015965959103__ ready |
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מיוגלובין Myoglobine
Jmol._Canvas2D (Jmol) "jmolApplet73_4"[x] loadScript https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/core/package.js loadScript https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/core/corejmol.z.js loadScript https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/core/corescript.z.js JSmol exec jmolApplet73_0 start applet null Jmol JavaScript applet jmolApplet73_0__774015965959103__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet73_0__774015965959103__) vwrOptions: { "name":"jmolApplet73_0","applet":true,"documentBase":"https://stwww1.weizmann.ac.il/chemlife/?p=73","platform":"J.awtjs2d.Platform","fullName":"jmolApplet73_0__774015965959103__","codePath":"https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/","display":"jmolApplet73_0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"774015965959103","bgcolor":"white" } setting document base to "https://stwww1.weizmann.ac.il/chemlife/?p=73" (C) 2015 Jmol Development Jmol Version: 14.29.4 2018-02-07 23:40 java.vendor: Java2Script (HTML5) java.version: 2018-01-28 23:38:52 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet73_0 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor white backgroundColor = "white" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet73_0__774015965959103__ ready script 1 started loading myoglobine... loading dna... en not supported -- using en callback set for language en null language = "en" FileManager.getAtomSetCollectionFromFile(https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/collagene2.pdb) FileManager opening url https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/collagene2.pdb The Resolver thinks Pdb loadScript https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/core/corebio.z.js Time for openFile(https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/collagene2.pdb): 633 ms reading 456 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 456 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically Jmol 14.29.4 2018-02-07 23:40 DSSP analysis for model 1.1 - null W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637 We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software, and we thank the CMBI for maintaining it to the extent that it was easy to re-engineer in Java for our purposes. Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841. All bioshapes have been deleted and must be regenerated. NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis. Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation. Time for creating model: 39 ms collagene2 Script completed Jmol script terminated loadScript https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/J/g3d/HermiteRenderer.js en not supported -- using en callback set for language en null language = "en" FileManager.getAtomSetCollectionFromFile(https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/12/Cellulose.mol) FileManager opening url https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/12/Cellulose.mol The Resolver thinks Pdb Time for openFile(https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/12/Cellulose.mol): 192 ms reading 129 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 129 atoms created ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation Time for creating model: 4 ms Cellulose Script completed Jmol script terminated en not supported -- using en callback set for language en null language = "en" FileManager.getAtomSetCollectionFromFile(https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/hemoglobine.pdb) FileManager opening url https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/hemoglobine.pdb The Resolver thinks Pdb Time for openFile(https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/hemoglobine.pdb): 912 ms reading 4649 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Jmol 4649 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically Jmol 14.29.4 2018-02-07 23:40 DSSP analysis for model 1.1 - null W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637 We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software, and we thank the CMBI for maintaining it to the extent that it was easy to re-engineer in Java for our purposes. Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841. All bioshapes have been deleted and must be regenerated. Time for creating model: 192 ms en not supported -- using en callback set for language en null language = "en" FileManager.getAtomSetCollectionFromFile(https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/myoglobine.pdb) FileManager opening url https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/myoglobine.pdb The Resolver thinks Pdb Time for openFile(https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/myoglobine.pdb): 193 ms reading 1266 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Jmol 1266 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically Jmol 14.29.4 2018-02-07 23:40 DSSP analysis for model 1.1 - null W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637 We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software, and we thank the CMBI for maintaining it to the extent that it was easy to re-engineer in Java for our purposes. Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841. All bioshapes have been deleted and must be regenerated. Time for creating model: 33 ms myoglobine Script completed Jmol script terminated en not supported -- using en callback set for language en null language = "en" FileManager.getAtomSetCollectionFromFile(https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/dna.pdb) FileManager opening url https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/dna.pdb The Resolver thinks Pdb Time for openFile(https://stwww1.weizmann.ac.il/chemlife/wp-content/uploads/sites/13/2016/11/dna.pdb): 194 ms reading 898 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 898 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically Time for creating model: 24 ms dna Script completed Jmol script terminated loadScript https://stwww1.weizmann.ac.il/chemlife/wp-content/plugins/jsmol2wp/j2s/J/renderbio/NucleicRenderer.js hemoglobine Script completed Jmol script terminated |
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